3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00651

Details:

PFam ID : PF00651

PFam Domain Description : BTB/POZ domain

Number of Sequence in 50% Dataset : 1458

Number of Sequence in Full Dataset : 4967

Average sequence length: 105.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00651	C1DY97_MICSR_1062_1134	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00651	E3N8N4_CAERE_1_60	99.9

Sequence based PCA Plot of the family - PF00651 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=47 Length=14
Motif2 Start=29 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay