3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00650

Details:

PFam ID : PF00650

PFam Domain Description : CRAL/TRIO domain

Number of Sequence in 50% Dataset : 565

Number of Sequence in Full Dataset : 1806

Average sequence length: 149.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00650	B9PYK1_TOXGO_209_371	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00650	B7PUL1_IXOSC_1_86	100

Sequence based PCA Plot of the family - PF00650 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=181 Length=8
Motif2 Start=52 Length=8
Motif3 Start=170 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay