3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00649

Details:

PFam ID : PF00649

PFam Domain Description : Copper fist DNA binding domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 73

Average sequence length: 38.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00649	Q4Z3U4_PLABA_674_1119	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00649	D1Z408_SORMK_1_37	100

Sequence based PCA Plot of the family - PF00649 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=14
Motif2 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay