3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00648

Details:

PFam ID : PF00648

PFam Domain Description : Calpain family cysteine protease

Number of Sequence in 50% Dataset : 290

Number of Sequence in Full Dataset : 882

Average sequence length: 234.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00648	Q4Z3U4_PLABA_674_1119	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00648	Q4TGI2_TETNG_60_89	99.8

Sequence based PCA Plot of the family - PF00648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=27 Length=8
Motif3 Start=89 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay