3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00647

Details:

PFam ID : PF00647

PFam Domain Description : Elongation factor 1 gamma, conserved domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 173

Average sequence length: 96.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00647	Q16NT0_AEDAE_242_281	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00647	C4JP09_UNCRE_275_323	100

Sequence based PCA Plot of the family - PF00647 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=65 Length=8
Motif2 Start=16 Length=8
Motif3 Start=34 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay