3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00646

Details:

PFam ID : PF00646

PFam Domain Description : F-box domain

Number of Sequence in 50% Dataset : 608

Number of Sequence in Full Dataset : 4798

Average sequence length: 45.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00646	Q16NT0_AEDAE_242_281	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00646	Q2HCN1_CHAGB_526_587	91.5

Sequence based PCA Plot of the family - PF00646 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=3 Length=8
Motif3 Start=13 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay