3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00643

Details:

PFam ID : PF00643

PFam Domain Description : B-box zinc finger

Number of Sequence in 50% Dataset : 131

Number of Sequence in Full Dataset : 1638

Average sequence length: 43.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00643	C3YMI6_BRAFL_96_149	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00643	C3YMI6_BRAFL_96_149	95.7

Sequence based PCA Plot of the family - PF00643 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay