3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00642

Details:

PFam ID : PF00642

PFam Domain Description : Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 1938

Average sequence length: 25.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00642	B0DY84_LACBS_3_29	11.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00642	C4WWM5_ACYPI_98_115	84

Sequence based PCA Plot of the family - PF00642 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay