3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00635

Details:

PFam ID : PF00635

PFam Domain Description : MSP (Major sperm protein) domain

Number of Sequence in 50% Dataset : 194

Number of Sequence in Full Dataset : 723

Average sequence length: 102.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00635	O45312_CAEEL_727_832	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00635	E9CAF2_9EUKA_372_493	100

Sequence based PCA Plot of the family - PF00635 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=75 Length=8
Motif3 Start=50 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay