3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00634

Details:

PFam ID : PF00634

PFam Domain Description : BRCA2 repeat

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 158

Average sequence length: 32.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00634	Q8SV31_ENCCU_135_168	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00634	E3MCK1_CAERE_44_74	92.3

Sequence based PCA Plot of the family - PF00634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=8
Motif2 Start=4 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay