3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00633

Details:

PFam ID : PF00633

PFam Domain Description : Helix-hairpin-helix motif

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 2033

Average sequence length: 29.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00633	DNLJ_GEOSE_528_557	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00633	F1Q4Q1_DANRE_107_132	97.2

Sequence based PCA Plot of the family - PF00633 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay