3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00632

Details:

PFam ID : PF00632

PFam Domain Description : HECT-domain (ubiquitin-transferase)

Number of Sequence in 50% Dataset : 414

Number of Sequence in Full Dataset : 1301

Average sequence length: 286.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00632	Q498X7_DANRE_397_702	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00632	B0XHY6_CULQU_24_78	100

Sequence based PCA Plot of the family - PF00632 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=6 Length=8
Motif3 Start=356 Length=8
Motif4 Start=394 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay