3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00631

Details:

PFam ID : PF00631

PFam Domain Description : GGL domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 296

Average sequence length: 69.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00631	C4Q468_SCHMA_12_79	54.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00631	E4XXY5_OIKDI_68_127	95.2

Sequence based PCA Plot of the family - PF00631 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay