3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00630

Details:

PFam ID : PF00630

PFam Domain Description : Filovirus glycoprotein

Number of Sequence in 50% Dataset : 476

Number of Sequence in Full Dataset : 1551

Average sequence length: 94.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00630	C4QS92_SCHMA_4_54	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00630	C3YT81_BRAFL_268_450	100

Sequence based PCA Plot of the family - PF00630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=170 Length=8
Motif2 Start=146 Length=23
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay