3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00629

Details:

PFam ID : PF00629

PFam Domain Description : MAM domain

Number of Sequence in 50% Dataset : 429

Number of Sequence in Full Dataset : 900

Average sequence length: 145.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00629	A3QWJ6_MICMU_24_58	91.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00629	Q4RLJ5_TETNG_21_116	99.5

Sequence based PCA Plot of the family - PF00629 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=16 Length=8
Motif3 Start=1 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay