3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00627

Details:

PFam ID : PF00627

PFam Domain Description : UBA/TS-N domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 2407

Average sequence length: 37.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00627	A7AQH7_BABBO_627_663	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00627	E9BYG1_9EUKA_1342_1378	83

Sequence based PCA Plot of the family - PF00627 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=29 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay