3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00626

Details:

PFam ID : PF00626

PFam Domain Description : Gelsolin repeat

Number of Sequence in 50% Dataset : 214

Number of Sequence in Full Dataset : 1586

Average sequence length: 77.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00626	B3MWI7_DROAN_1160_1202	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00626	Q70MN0_CRAGI_176_226	94.6

Sequence based PCA Plot of the family - PF00626 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay