3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00625

Details:

PFam ID : PF00625

PFam Domain Description : Guanylate kinase

Number of Sequence in 50% Dataset : 198

Number of Sequence in Full Dataset : 1890

Average sequence length: 169.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00625	F1NMZ1_CHICK_1_51	72.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00625	F2UKL3_9EUKA_250_363	99.6

Sequence based PCA Plot of the family - PF00625 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay