3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00619

Details:

PFam ID : PF00619

PFam Domain Description : Caspase recruitment domain

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 400

Average sequence length: 83.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00619	C3YVA8_BRAFL_379_471	16.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00619	CASPC_HUMAN_7_91	99.7

Sequence based PCA Plot of the family - PF00619 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=58 Length=8
Motif3 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay