3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00616

Details:

PFam ID : PF00616

PFam Domain Description : GTPase-activator protein for Ras-like GTPase

Number of Sequence in 50% Dataset : 203

Number of Sequence in Full Dataset : 479

Average sequence length: 181.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00616	A7RYQ9_NEMVE_213_314	83.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00616	A0DYI4_PARTE_179_505	99.7

Sequence based PCA Plot of the family - PF00616 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8
Motif3 Start=141 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay