3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00612

Details:

PFam ID : PF00612

PFam Domain Description : IQ calmodulin-binding motif

Number of Sequence in 50% Dataset : 1855

Number of Sequence in Full Dataset : 4318

Average sequence length: 20.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00612	A0E652_PARTE_3_84	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00612	A7RYK1_NEMVE_91_111	55

Sequence based PCA Plot of the family - PF00612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay