3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00611

Details:

PFam ID : PF00611

PFam Domain Description : Fes/CIP4, and EFC/F-BAR homology domain

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 598

Average sequence length: 91.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00611	A0E652_PARTE_3_84	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00611	Q55QZ7_CRYNE_28_123	99.8

Sequence based PCA Plot of the family - PF00611 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay