3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00608

Details:

PFam ID : PF00608

PFam Domain Description : Adenoviral fibre protein (repeat/shaft region)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 166

Average sequence length: 29.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00608	Q5C8N5_9ADEN_182_212	39.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00608	Q7LZW3_ADEB3_594_623	95.7

Sequence based PCA Plot of the family - PF00608 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay