3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00607

Details:

PFam ID : PF00607

PFam Domain Description : gag gene protein p24 (core nucleocapsid protein)

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 483

Average sequence length: 135.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00607	Q85632_AVIMH_1_79	63.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00607	Q3S7X3_9HIV1_48_84	93.7

Sequence based PCA Plot of the family - PF00607 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay