3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00606

Details:

PFam ID : PF00606

PFam Domain Description : Herpesvirus Glycoprotein B

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 190

Average sequence length: 287.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00606	Q87069_9ALPH_1_48	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00606	Q8BAH5_9ALPH_47_789	100

Sequence based PCA Plot of the family - PF00606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=62 Length=8
Motif3 Start=5 Length=8
Motif4 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay