3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00605

Details:

PFam ID : PF00605

PFam Domain Description : Interferon regulatory factor transcription factor

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 143

Average sequence length: 99.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00605	A0MZ86_PIG_1_36	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00605	B3RVR8_TRIAD_4_116	100

Sequence based PCA Plot of the family - PF00605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=8
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay