3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00604

Details:

PFam ID : PF00604

PFam Domain Description : FlxA-like protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 16

Average sequence length: 224.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00604	A5H304_9INFB_1_215	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00604	PB2_THOGV_15_405	100

Sequence based PCA Plot of the family - PF00604 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay