3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00603

Details:

PFam ID : PF00603

PFam Domain Description : Influenza RNA-dependent RNA polymerase subunit PB1

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 29

Average sequence length: 214.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00603	D1MXK9_9INFA_1_160	35.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00603	F2Q6T4_9INFA_7_702	96.4

Sequence based PCA Plot of the family - PF00603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=481 Length=8
Motif4 Start=249 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay