3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00601

Details:

PFam ID : PF00601

PFam Domain Description : Influenza RNA-dependent RNA polymerase subunit PA

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 21

Average sequence length: 76.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00601	E1B5M1_9INFA_1_61	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00601	Q67275_9INFA_1_68	95

Sequence based PCA Plot of the family - PF00601 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay