3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00600

Details:

PFam ID : PF00600

PFam Domain Description : Influenza non-structural protein (NS2)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 51

Average sequence length: 200.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00600	E1B5M1_9INFA_1_61	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00600	Q8QLY8_9INFA_1_204	100

Sequence based PCA Plot of the family - PF00600 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=53 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay