3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00598

Details:

PFam ID : PF00598

PFam Domain Description : Influenza Matrix protein (M1) C-terminal domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 17

Average sequence length: 64.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00598	B3PJV4_CELJU_76_187	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00598	A0N175_9INFB_1_148	100

Sequence based PCA Plot of the family - PF00598 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay