3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00596

Details:

PFam ID : PF00596

PFam Domain Description : Class II Aldolase and Adducin N-terminal domain

Number of Sequence in 50% Dataset : 340

Number of Sequence in Full Dataset : 2453

Average sequence length: 181.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00596	B3PJV4_CELJU_76_187	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00596	E3QVR6_COLGM_55_184	100

Sequence based PCA Plot of the family - PF00596 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay