3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00593

Details:

PFam ID : PF00593

PFam Domain Description : TonB dependent receptor

Number of Sequence in 50% Dataset : 5182

Number of Sequence in Full Dataset : 12894

Average sequence length: 289.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00593	B9T8N9_RICCO_7_179	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00593	D8F1E2_9DELT_2_172	98.7

Sequence based PCA Plot of the family - PF00593 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=17 Length=11
Motif3 Start=1 Length=8
Motif4 Start=256 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay