3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00591

Details:

PFam ID : PF00591

PFam Domain Description : Glycosyl transferase family, a/b domain

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 1944

Average sequence length: 243.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00591	E0Y1X0_9GAMM_7_176	69.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00591	D6TQG4_9CHLR_130_235	98.9

Sequence based PCA Plot of the family - PF00591 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=37 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay