3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00590

Details:

PFam ID : PF00590

PFam Domain Description : Tetrapyrrole (Corrin/Porphyrin) Methylases

Number of Sequence in 50% Dataset : 480

Number of Sequence in Full Dataset : 5843

Average sequence length: 205.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00590	A5JHC7_9EURY_2_97	87.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00590	Q9R9K3_PARDE_5_126	100

Sequence based PCA Plot of the family - PF00590 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=39 Length=8
Motif3 Start=87 Length=11
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay