3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00587

Details:

PFam ID : PF00587

PFam Domain Description : tRNA synthetase class II core domain (G, H, P, S and T)

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 4579

Average sequence length: 183.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00587	F1RD17_DANRE_179_419	70.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00587	B9H705_POPTR_18_113	99.8

Sequence based PCA Plot of the family - PF00587 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=100 Length=8
Motif3 Start=151 Length=17
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay