3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00586

Details:

PFam ID : PF00586

PFam Domain Description : AIR synthase related protein, N-terminal domain

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 4509

Average sequence length: 101.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00586	E8ZSC6_CLOB0_1_58	83.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00586	A8V1R7_9AQUI_438_505	98.1

Sequence based PCA Plot of the family - PF00586 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=38 Length=11
Motif3 Start=26 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay