3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00585

Details:

PFam ID : PF00585

PFam Domain Description : C-terminal regulatory domain of Threonine dehydratase

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 898

Average sequence length: 90.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00585	A8PY36_MALGO_362_427	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00585	Q9AUQ1_ORYSA_509_556	99.8

Sequence based PCA Plot of the family - PF00585 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=17
Motif2 Start=44 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay