3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00582

Details:

PFam ID : PF00582

PFam Domain Description : Universal stress protein family

Number of Sequence in 50% Dataset : 3021

Number of Sequence in Full Dataset : 8297

Average sequence length: 136.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00582	F2LXP9_9DELT_202_265	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00582	B3WV19_ECOLX_1_87	99.6

Sequence based PCA Plot of the family - PF00582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=77 Length=8
Motif2 Start=2 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay