3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00580

Details:

PFam ID : PF00580

PFam Domain Description : UvrD/REP helicase N-terminal domain

Number of Sequence in 50% Dataset : 1506

Number of Sequence in Full Dataset : 5943

Average sequence length: 255.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00580	E3DPH2_HALPG_8_246	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00580	B9QMR3_TOXGO_729_1314	100

Sequence based PCA Plot of the family - PF00580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=473 Length=14
Motif2 Start=48 Length=17
Motif3 Start=496 Length=20
Motif4 Start=14 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay