3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00579

Details:

PFam ID : PF00579

PFam Domain Description : tRNA synthetases class I (W and Y)

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 3282

Average sequence length: 270.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00579	E3C357_9LACO_53_151	55.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00579	E0Y2M1_9GAMM_3_68	99.7

Sequence based PCA Plot of the family - PF00579 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=18
Motif2 Start=45 Length=11
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay