3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00578

Details:

PFam ID : PF00578

PFam Domain Description : AhpC/TSA family

Number of Sequence in 50% Dataset : 1007

Number of Sequence in Full Dataset : 5977

Average sequence length: 126.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00578	A9A1G9_NITMS_5_202	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00578	A0Z3R8_9GAMM_1_68	99.8

Sequence based PCA Plot of the family - PF00578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=25 Length=26
Motif2 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay