3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00577

Details:

PFam ID : PF00577

PFam Domain Description : Type VII secretion system (T7SS), usher protein

Number of Sequence in 50% Dataset : 331

Number of Sequence in Full Dataset : 920

Average sequence length: 473.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00577	C0ARK0_9ENTR_186_225	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00577	D1NFJ4_HAEIF_1_123	99.8

Sequence based PCA Plot of the family - PF00577 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=6 Length=20
Motif3 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay