3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00576

Details:

PFam ID : PF00576

PFam Domain Description : HIUase/Transthyretin family

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 543

Average sequence length: 108.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00576	A9W6Y0_METEP_7_72	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00576	E5ADS4_LEPMC_113_183	100

Sequence based PCA Plot of the family - PF00576 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=22 Length=11
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay