3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00574

Details:

PFam ID : PF00574

PFam Domain Description : Clp protease

Number of Sequence in 50% Dataset : 188

Number of Sequence in Full Dataset : 2203

Average sequence length: 172.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00574	D5U8F4_BRAM5_50_179	66.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00574	B7FG60_MEDTR_23_64	99.9

Sequence based PCA Plot of the family - PF00574 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=174 Length=17
Motif2 Start=33 Length=41
Motif3 Start=109 Length=32

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay