3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00571

Details:

PFam ID : PF00571

PFam Domain Description : CBS domain

Number of Sequence in 50% Dataset : 2003

Number of Sequence in Full Dataset : 23717

Average sequence length: 56.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00571	C0W3U3_9ACTO_469_538	57.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00571	Q2SFW8_HAHCH_193_245	96.0

Sequence based PCA Plot of the family - PF00571 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=32 Length=8
Motif3 Start=52 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay