3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00570

Details:

PFam ID : PF00570

PFam Domain Description : HRDC domain

Number of Sequence in 50% Dataset : 222

Number of Sequence in Full Dataset : 1744

Average sequence length: 67.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00570	A0EBI7_PARTE_425_485	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00570	D7GE10_PROFC_253_325	100

Sequence based PCA Plot of the family - PF00570 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=22 Length=8
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay