3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00569

Details:

PFam ID : PF00569

PFam Domain Description : Zinc finger, ZZ type

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 780

Average sequence length: 44.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00569	HAC2_ARATH_1109_1137	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00569	Q4Y572_PLACH_77_129	100

Sequence based PCA Plot of the family - PF00569 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay