3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00567

Details:

PFam ID : PF00567

PFam Domain Description : Tudor domain

Number of Sequence in 50% Dataset : 565

Number of Sequence in Full Dataset : 1267

Average sequence length: 116.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00567	A8QHD3_BRUMA_345_460	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00567	B4G7N4_DROPE_14_131	100

Sequence based PCA Plot of the family - PF00567 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=45 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay