3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00563

Details:

PFam ID : PF00563

PFam Domain Description : EAL domain

Number of Sequence in 50% Dataset : 2417

Number of Sequence in Full Dataset : 8546

Average sequence length: 227.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00563	Q5NWV5_AROAE_15_247	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00563	A6AJ21_VIBCH_20_136	99.9

Sequence based PCA Plot of the family - PF00563 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=262 Length=11
Motif2 Start=241 Length=14
Motif3 Start=158 Length=35
Motif4 Start=28 Length=35

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay